This is a bug in your script.

Currently, you have only two arrays objects allocated : Array_One and
Array_Two.
But you want 1+n array object, where n is the number of elements of
Array_One (Array_One.length)
because each element of Array_One has to be a new array object.
So you have to build Array_Two object INSIDE the loop, just when you change
Index_One.

I tried to understand your algorithm, but I'll could help you much more if
you send me/the group a sample of the file you are parsing.

Olivier Mengu